Genetic analysis and mapping of adult plant resistance loci to leaf rust in durum wheat cultivar Bairds.
Identifieur interne : 000532 ( Main/Exploration ); précédent : 000531; suivant : 000533Genetic analysis and mapping of adult plant resistance loci to leaf rust in durum wheat cultivar Bairds.
Auteurs : Caixia Lan [Mexique] ; Bhoja R. Basnet [Mexique] ; Ravi P. Singh [Mexique] ; Julio Huerta-Espino [Mexique] ; Sybil A. Herrera-Foessel [Mexique] ; Yong Ren [République populaire de Chine] ; Mandeep S. Randhawa [Mexique]Source :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN des plantes (génétique), Amélioration des plantes (MeSH), Basidiomycota (MeSH), Cartographie chromosomique (MeSH), Gènes de plante (MeSH), Génotype (MeSH), Liaison génétique (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Phénotype (MeSH), Répétitions microsatellites (MeSH), Résistance à la maladie (génétique), Triticum (génétique), Triticum (microbiologie).
- MESH :
- génétique : ADN des plantes, Maladies des plantes, Résistance à la maladie, Triticum.
- microbiologie : Maladies des plantes, Triticum.
- Amélioration des plantes, Basidiomycota, Cartographie chromosomique, Gènes de plante, Génotype, Liaison génétique, Locus de caractère quantitatif, Marqueurs génétiques, Phénotype, Répétitions microsatellites.
English descriptors
- KwdEn :
- Basidiomycota (MeSH), Chromosome Mapping (MeSH), DNA, Plant (genetics), Disease Resistance (genetics), Genes, Plant (MeSH), Genetic Linkage (MeSH), Genetic Markers (MeSH), Genotype (MeSH), Microsatellite Repeats (MeSH), Phenotype (MeSH), Plant Breeding (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Quantitative Trait Loci (MeSH), Triticum (genetics), Triticum (microbiology).
- MESH :
- chemical , genetics : DNA, Plant.
- genetics : Disease Resistance, Plant Diseases, Triticum.
- microbiology : Plant Diseases, Triticum.
- Basidiomycota, Chromosome Mapping, Genes, Plant, Genetic Linkage, Genetic Markers, Genotype, Microsatellite Repeats, Phenotype, Plant Breeding, Quantitative Trait Loci.
Abstract
KEY MESSAGE
New leaf rust adult plant resistance (APR) QTL QLr.cim - 6BL was mapped and confirmed the known pleotropic APR gene Lr46 effect on leaf rust in durum wheat line Bairds. CIMMYT-derived durum wheat line Bairds displays an adequate level of adult plant resistance (APR) to leaf rust in Mexican field environments. A recombinant inbred line (RIL) population developed from a cross of Bairds with susceptible parent Atred#1 was phenotyped for leaf rust response at Ciudad Obregon, Mexico, during 2013, 2014, 2015 and 2016 under artificially created epidemics of Puccinia triticina (Pt) race BBG/BP. The RIL population and its parents were genotyped with the 50 K diversity arrays technology (DArT) sequence system and simple sequence repeat (SSR) markers. A genetic map comprising 1150 markers was used to map the resistance loci. Four significant quantitative trait loci (QTLs) were detected on chromosomes 1BL, 2BC (centromere region), 5BL and 6BL. These QTLs, named Lr46, QLr.cim-2BC, QLr.cim-5BL and QLr.cim-6BL, respectively, explained 13.5-60.8%, 9.0-14.3%, 2.8-13.9%, and 11.6-29.4%, respectively, of leaf rust severity variation by the inclusive composite interval mapping method. All of these resistance loci were contributed by the resistant parent Bairds, except for QLr.cim-2BC, which came from susceptible parent Atred#1. Among these, the QTL on chromosome 1BL was the known pleiotropic APR gene Lr46, whereas QLr.cim-6BL, a consistently detected locus, should be a new leaf rust resistance locus in durum wheat. The mean leaf rust severity of RILs carrying all four QTLs ranged from 8.0 to 17.5%, whereas it ranged from 10.9 to 38.5% for three QTLs (Lr46 + 5BL + 6BL) derived from the resistant parent Bairds. Two RILs with four QTLs combinations can be used as sources of complex APR in durum wheat breeding.
DOI: 10.1007/s00122-016-2839-3
PubMed: 28004134
Affiliations:
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Randhawa</name><affiliation wicri:level="1"><nlm:affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>International Maize and Wheat Improvement Center (CIMMYT), Apdo. 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Postal 6-641, 06600, Texcoco, México D.F., Mexico. c.lan@cgiar.org.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F.</wicri:regionArea><wicri:noRegion>México D.F.</wicri:noRegion></affiliation></author><author><name sortKey="Basnet, Bhoja R" sort="Basnet, Bhoja R" uniqKey="Basnet B" first="Bhoja R" last="Basnet">Bhoja R. Basnet</name><affiliation wicri:level="1"><nlm:affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F.</wicri:regionArea><wicri:noRegion>México D.F.</wicri:noRegion></affiliation></author><author><name sortKey="Singh, Ravi P" sort="Singh, Ravi P" uniqKey="Singh R" first="Ravi P" last="Singh">Ravi P. Singh</name><affiliation wicri:level="1"><nlm:affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F.</wicri:regionArea><wicri:noRegion>México D.F.</wicri:noRegion></affiliation></author><author><name sortKey="Huerta Espino, Julio" sort="Huerta Espino, Julio" uniqKey="Huerta Espino J" first="Julio" last="Huerta-Espino">Julio Huerta-Espino</name><affiliation wicri:level="1"><nlm:affiliation>Campo Experimental Valle de México INIFAP, Apdo. Postal 10, 56230, Chapingo, Texcoco, Edo. de México, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Campo Experimental Valle de México INIFAP, Apdo. Postal 10, 56230, Chapingo, Texcoco, Edo. de México</wicri:regionArea><wicri:noRegion>Edo. de México</wicri:noRegion></affiliation></author><author><name sortKey="Herrera Foessel, Sybil A" sort="Herrera Foessel, Sybil A" uniqKey="Herrera Foessel S" first="Sybil A" last="Herrera-Foessel">Sybil A. Herrera-Foessel</name><affiliation wicri:level="1"><nlm:affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F.</wicri:regionArea><wicri:noRegion>México D.F.</wicri:noRegion></affiliation></author><author><name sortKey="Ren, Yong" sort="Ren, Yong" uniqKey="Ren Y" first="Yong" last="Ren">Yong Ren</name><affiliation wicri:level="1"><nlm:affiliation>Mianyang Institute of Agricultural Science/Mianyang Branch of National Wheat Improvement Center, 8 Songjiang Road, Mianyang, 621023, Sichuan, People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Mianyang Institute of Agricultural Science/Mianyang Branch of National Wheat Improvement Center, 8 Songjiang Road, Mianyang, 621023, Sichuan</wicri:regionArea><wicri:noRegion>Sichuan</wicri:noRegion></affiliation></author><author><name sortKey="Randhawa, Mandeep S" sort="Randhawa, Mandeep S" uniqKey="Randhawa M" first="Mandeep S" last="Randhawa">Mandeep S. Randhawa</name><affiliation wicri:level="1"><nlm:affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F.</wicri:regionArea><wicri:noRegion>México D.F.</wicri:noRegion></affiliation></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="eISSN">1432-2242</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (MeSH)</term><term>Chromosome Mapping (MeSH)</term><term>DNA, Plant (genetics)</term><term>Disease Resistance (genetics)</term><term>Genes, Plant (MeSH)</term><term>Genetic Linkage (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Genotype (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>Phenotype (MeSH)</term><term>Plant Breeding (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Quantitative Trait Loci (MeSH)</term><term>Triticum (genetics)</term><term>Triticum (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term><term>Amélioration des plantes (MeSH)</term><term>Basidiomycota (MeSH)</term><term>Cartographie chromosomique (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Génotype (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Phénotype (MeSH)</term><term>Répétitions microsatellites (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Triticum (génétique)</term><term>Triticum (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term><term>Maladies des plantes</term><term>Résistance à la maladie</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Basidiomycota</term><term>Chromosome Mapping</term><term>Genes, Plant</term><term>Genetic Linkage</term><term>Genetic Markers</term><term>Genotype</term><term>Microsatellite Repeats</term><term>Phenotype</term><term>Plant Breeding</term><term>Quantitative Trait Loci</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Amélioration des plantes</term><term>Basidiomycota</term><term>Cartographie chromosomique</term><term>Gènes de plante</term><term>Génotype</term><term>Liaison génétique</term><term>Locus de caractère quantitatif</term><term>Marqueurs génétiques</term><term>Phénotype</term><term>Répétitions microsatellites</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b></p><p>New leaf rust adult plant resistance (APR) QTL QLr.cim - 6BL was mapped and confirmed the known pleotropic APR gene Lr46 effect on leaf rust in durum wheat line Bairds. CIMMYT-derived durum wheat line Bairds displays an adequate level of adult plant resistance (APR) to leaf rust in Mexican field environments. A recombinant inbred line (RIL) population developed from a cross of Bairds with susceptible parent Atred#1 was phenotyped for leaf rust response at Ciudad Obregon, Mexico, during 2013, 2014, 2015 and 2016 under artificially created epidemics of Puccinia triticina (Pt) race BBG/BP. The RIL population and its parents were genotyped with the 50 K diversity arrays technology (DArT) sequence system and simple sequence repeat (SSR) markers. A genetic map comprising 1150 markers was used to map the resistance loci. Four significant quantitative trait loci (QTLs) were detected on chromosomes 1BL, 2BC (centromere region), 5BL and 6BL. These QTLs, named Lr46, QLr.cim-2BC, QLr.cim-5BL and QLr.cim-6BL, respectively, explained 13.5-60.8%, 9.0-14.3%, 2.8-13.9%, and 11.6-29.4%, respectively, of leaf rust severity variation by the inclusive composite interval mapping method. All of these resistance loci were contributed by the resistant parent Bairds, except for QLr.cim-2BC, which came from susceptible parent Atred#1. Among these, the QTL on chromosome 1BL was the known pleiotropic APR gene Lr46, whereas QLr.cim-6BL, a consistently detected locus, should be a new leaf rust resistance locus in durum wheat. The mean leaf rust severity of RILs carrying all four QTLs ranged from 8.0 to 17.5%, whereas it ranged from 10.9 to 38.5% for three QTLs (Lr46 + 5BL + 6BL) derived from the resistant parent Bairds. Two RILs with four QTLs combinations can be used as sources of complex APR in durum wheat breeding.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28004134</PMID><DateCompleted><Year>2017</Year><Month>03</Month><Day>06</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2242</ISSN><JournalIssue CitedMedium="Internet"><Volume>130</Volume><Issue>3</Issue><PubDate><Year>2017</Year><Month>Mar</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Genetic analysis and mapping of adult plant resistance loci to leaf rust in durum wheat cultivar Bairds.</ArticleTitle><Pagination><MedlinePgn>609-619</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00122-016-2839-3</ELocationID><Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="UNASSIGNED">New leaf rust adult plant resistance (APR) QTL QLr.cim - 6BL was mapped and confirmed the known pleotropic APR gene Lr46 effect on leaf rust in durum wheat line Bairds. CIMMYT-derived durum wheat line Bairds displays an adequate level of adult plant resistance (APR) to leaf rust in Mexican field environments. A recombinant inbred line (RIL) population developed from a cross of Bairds with susceptible parent Atred#1 was phenotyped for leaf rust response at Ciudad Obregon, Mexico, during 2013, 2014, 2015 and 2016 under artificially created epidemics of Puccinia triticina (Pt) race BBG/BP. The RIL population and its parents were genotyped with the 50 K diversity arrays technology (DArT) sequence system and simple sequence repeat (SSR) markers. A genetic map comprising 1150 markers was used to map the resistance loci. Four significant quantitative trait loci (QTLs) were detected on chromosomes 1BL, 2BC (centromere region), 5BL and 6BL. These QTLs, named Lr46, QLr.cim-2BC, QLr.cim-5BL and QLr.cim-6BL, respectively, explained 13.5-60.8%, 9.0-14.3%, 2.8-13.9%, and 11.6-29.4%, respectively, of leaf rust severity variation by the inclusive composite interval mapping method. All of these resistance loci were contributed by the resistant parent Bairds, except for QLr.cim-2BC, which came from susceptible parent Atred#1. Among these, the QTL on chromosome 1BL was the known pleiotropic APR gene Lr46, whereas QLr.cim-6BL, a consistently detected locus, should be a new leaf rust resistance locus in durum wheat. The mean leaf rust severity of RILs carrying all four QTLs ranged from 8.0 to 17.5%, whereas it ranged from 10.9 to 38.5% for three QTLs (Lr46 + 5BL + 6BL) derived from the resistant parent Bairds. Two RILs with four QTLs combinations can be used as sources of complex APR in durum wheat breeding.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lan</LastName><ForeName>Caixia</ForeName><Initials>C</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-8436-9486</Identifier><AffiliationInfo><Affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico. c.lan@cgiar.org.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Basnet</LastName><ForeName>Bhoja R</ForeName><Initials>BR</Initials><AffiliationInfo><Affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Singh</LastName><ForeName>Ravi P</ForeName><Initials>RP</Initials><AffiliationInfo><Affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huerta-Espino</LastName><ForeName>Julio</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Campo Experimental Valle de México INIFAP, Apdo. Postal 10, 56230, Chapingo, Texcoco, Edo. de México, Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Herrera-Foessel</LastName><ForeName>Sybil A</ForeName><Initials>SA</Initials><AffiliationInfo><Affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ren</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Mianyang Institute of Agricultural Science/Mianyang Branch of National Wheat Improvement Center, 8 Songjiang Road, Mianyang, 621023, Sichuan, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Randhawa</LastName><ForeName>Mandeep S</ForeName><Initials>MS</Initials><AffiliationInfo><Affiliation>International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600, Texcoco, México D.F., Mexico.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>12</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome 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Basnet</name><name sortKey="Herrera Foessel, Sybil A" sort="Herrera Foessel, Sybil A" uniqKey="Herrera Foessel S" first="Sybil A" last="Herrera-Foessel">Sybil A. Herrera-Foessel</name><name sortKey="Huerta Espino, Julio" sort="Huerta Espino, Julio" uniqKey="Huerta Espino J" first="Julio" last="Huerta-Espino">Julio Huerta-Espino</name><name sortKey="Randhawa, Mandeep S" sort="Randhawa, Mandeep S" uniqKey="Randhawa M" first="Mandeep S" last="Randhawa">Mandeep S. Randhawa</name><name sortKey="Singh, Ravi P" sort="Singh, Ravi P" uniqKey="Singh R" first="Ravi P" last="Singh">Ravi P. Singh</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Ren, Yong" sort="Ren, Yong" uniqKey="Ren Y" first="Yong" last="Ren">Yong Ren</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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